STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yheAConserved hypothetical protein YheA; Belongs to the UPF0342 family. (117 aa)    
Predicted Functional Partners:
ymcA
Conserved hypothetical protein; Belongs to the UPF0342 family.
  
 
 
 0.797
yheB
Conserved hypothetical protein YheB.
       0.660
yhaX
HAD-superfamily hydrolase protein YhaX.
       0.545
yheD
Conserved hypothetical protein YheD.
       0.505
yshB
Conserved membrane protein YshB.
  
     0.492
hemZ
Coproporphyrinogen III oxidase.
       0.485
yheE
Conserved hypothetical protein YheE.
       0.461
yxkF
Hypothetical protein with helix-turn-helix domain.
       0.458
BL07010
Hypothetical protein; BLi01059.
       0.442
ytgP
Possible polysaccharide transporter YtgP.
  
     0.432
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.