STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BL02879N-acetylmuramoyl-L-alanine amidase. (225 aa)    
Predicted Functional Partners:
lytB
Modifier protein of major autolysin LytC (CWBP76).
 
 0.815
BL02880
Hypothetical protein.
       0.773
ydcA
Conserved membrane protein YdcA.
   
   0.724
cwlC
N-acetylmuramoyl-L-alanine amidase.
  
 
0.642
cwlD
N-acetylmuramoyl-L-alanine amidase.
  
  
 
0.631
yrvJ
N-acetylmuramoyl-L-alanine amidase YrvJ.
 
  
 
0.600
ydcC
Conserved membrane protein YdcC.
    
   0.532
gluP
TPR motif integral membrane protein GluP.
  
   0.495
yocH
Putative peptidogycan hydrolase YocH.
 
  
 0.481
ctpB
Peptidase S41A, C-terminal protease; Belongs to the peptidase S41A family.
  
 
 0.460
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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