STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hmpFlavohemoglobin; Belongs to the globin family. (404 aa)    
Predicted Functional Partners:
scdA
Putative ScdA; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.
  
  
 0.980
yhdE
Conserved hypothetical protein YhdE; Nitric oxide-responsive transcriptional regulator.
 
   
 0.952
yflK
Conserved hypothetical protein with MOSC domain YflK.
   
 0.912
BL00714
Conserved hypothetical protein.
   
 0.904
narG
Nitrate reductase (alpha subunit); Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 0.903
nasD
Assimilatory nitrite reductase (subunit); Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
  
 0.848
ahpF
Alkyl hydroperoxide reductase (large subunit) and NADH dehydrogenase.
  
   
 0.789
nasB
Assimilatory nitrate reductase (electron transfer subunit); Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
  
 0.780
gltA
Glutamate synthase (large subunit).
      
 0.779
yjbI
Truncated form of bacterial hemoglobin YjbI.
     
 0.748
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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