Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sspNSmall acid-soluble spore protein; Belongs to the SspN family. (47 aa)    
Predicted Functional Partners:
tlp
Small acid-soluble spore protein (thioredoxin-like protein); Belongs to the Tlp family.
  
  
 0.990
sspO
Small acid-soluble spore protein; Belongs to the SspO family.
  
  
 0.778
sspP
Small acid-soluble spore protein; Belongs to the SspP family.
  
  
 0.764
sspK
Small acid-soluble spore protein; Belongs to the SspK family.
   
  
 0.645
sspJ
Hypothetical protein; BLi03524.
   
  
 0.630
yfhD
YfhD.
   
    0.617
BL02942
Hypothetical protein.
       0.609
ymfJ
Hypothetical protein.
   
    0.607
yneP
Putative thioesterase YneP.
       0.557
sigG
RNA polymerase sporulation-specific sigma factor (sigma-G); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
      
 0.549
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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