STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yukFConserved protein YukF. (412 aa)    
Predicted Functional Partners:
yfhS
Conserved protein YhfS.
  
     0.614
pucR
Transcriptional regulator; Purine degradation.
  
     0.547
ald
L-alanine dehydrogenase.
       0.546
ykzI
Hypothetical protein.
  
     0.526
BL02624
Sodium:alanine symporter.
       0.507
BL02023
Penicillin-binding protein.
  
     0.456
yjjA
Putative Uroporphyrinogen III synthase YjjA.
  
     0.416
yjzC
Conserved hypothetical protein YjzC.
  
     0.413
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.