Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yfiDConserved membrane protein YfiD. (147 aa)    
Predicted Functional Partners:
yfiE
Glyoxalase I YfiE.
  
  
 0.946
yvaP
Possible transcriptional regulator YvaP.
       0.642
BL05015
Conserved hypothetical protein.
  
  
 0.621
yloB
ATPase, E1-E2 type protein.
   
  0.513
BL03022
Glycoside Hydrolase Family 43; Similar to xynB from Bacillus subtilis; Belongs to the glycosyl hydrolase 43 family.
       0.471
xynB
Glycoside Hydrolase Family 43; Similar to xynB from Bacillus subtilis,xylan beta-1,4-xylosidase; Belongs to the glycosyl hydrolase 43 family.
       0.471
gidA
Glucose-inhibited division protein; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
    
 
 0.463
yebG
Conserved protein YebG.
  
   
 0.429
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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