STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfiEGlyoxalase I YfiE. (286 aa)    
Predicted Functional Partners:
yfiD
Conserved membrane protein YfiD.
  
  
 0.904
ykcA
Glyoxalase/Bleomycin resistance protein/dioxygenase domain superfamily protein.
  
 
 0.748
ydfO
Glyoxalase domain protein YdfO.
  
 
 0.742
yrkH
Conserved protein YrkH.
   
 
  0.724
BL02060
Metallo-beta-lactamase/rhodanese-like domain protein.
   
 
  0.724
BL01295
Putative oxidoreductase.
 
    0.663
yolF
Phospholipase/carboxylesterase family protein.
 
    0.660
yvaP
Possible transcriptional regulator YvaP.
     
 0.614
BL03908
4-oxalocrotonate tautomerase.
    
 0.601
ywhB
Putative 4-oxalocrotonate tautomerase.
    
 0.601
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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