STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yfiEGlyoxalase I YfiE. (286 aa)    
Predicted Functional Partners:
yfiD
Conserved membrane protein YfiD.
  
  
 0.946
BL03908
4-oxalocrotonate tautomerase.
    
 0.914
ywhB
Putative 4-oxalocrotonate tautomerase.
    
 0.914
BL03906
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
  0.900
ykcA
Glyoxalase/Bleomycin resistance protein/dioxygenase domain superfamily protein.
 
  
 0.765
yvaP
Possible transcriptional regulator YvaP.
     
 0.746
ydfO
Glyoxalase domain protein YdfO.
 
  
 0.714
BL01295
Putative oxidoreductase.
 
    0.687
yolF
Phospholipase/carboxylesterase family protein.
 
     0.657
yodC
Putative Nitroreductase.
     
 0.613
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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