STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yfhCNitroreductase family. (192 aa)    
Predicted Functional Partners:
yxeB
Periplasmic binding protein YxeB.
   
    0.664
nfsB
NADH-dependent nitro/flavin oxidoreductase.
  
   
 0.663
yfiN
ABC transporter, family 2,ABC transporter, family 2.
  
  
 0.632
ykuO
Glycoside hydrolase.
   
  
 0.589
birA
Transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.586
BL02838
Conserved hypothetical protein.
  
  
 0.572
yfhB
Phenazine biosynthesis-like protein; PhzC/PhzF protein.
  
    0.543
ykuP
Flavodoxin, short chain.
   
  
 0.513
yfiM
ABC transport system permease protein.
  
    0.475
ykuN
Flavodoxin, short chain; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family.
   
  
 0.474
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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