STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfhJConserved protein YfhJ. (89 aa)    
Predicted Functional Partners:
yvlB
Conserved hypothetical protein YvlB.
  
     0.722
yhaK
Hypothetical protein.
  
     0.654
yfjT
Conserved protein YfjT.
  
     0.628
yufK
Hypothetical protein.
  
     0.601
sspK
Small acid-soluble spore protein; Belongs to the SspK family.
       0.594
yebG
Conserved protein YebG.
  
     0.583
yeaA
Conserved protein YeaA.
  
     0.555
BL07013
Hypothetical protein; BLi01075.
  
     0.548
yuzB
Conserved protein YuzB; Belongs to the UPF0349 family.
  
     0.539
splA
Transcriptional regulator.
  
     0.528
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.