STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfhOConserved membrane protein YfhO. (861 aa)    
Predicted Functional Partners:
BL03036
Putative transporter.
 
  
 0.966
csbB
Stress response protein, Glycosyl Transferase Family 2.
 
  
 0.935
BL03517
Hypothetical phagelike protein.
  
     0.616
ykcC
Glycosyl transferase, family 2.
 
  
 0.593
BL01975
Glycosyl transferase, family 2.
 
  
 0.559
BL00869
Phage related protein.
  
     0.552
ydaT
Conserved protein YdaT.
  
     0.542
yflT
Conserved hypothetical protein YflT; General stress protein.
  
     0.524
yhaK
Hypothetical protein.
  
     0.447
ydaL
YdaL.
  
     0.417
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.