STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfhFConserved hypothetical protein, YfcH; NAD dependent epimerase/dehydratase family. (299 aa)    
Predicted Functional Partners:
ydaG
FMN-binding split barrel domain protein YdaG.
   
    0.743
yjbC
GCN5-related N-acetyltransferase.
  
    0.681
arcA
Arginine deiminase.
   
    0.638
yuiD
Conserved membrane protein YuiD.
   
    0.638
ywnB
YwnB.
   
    0.638
BL03004
GCN5-related N-acetyltransferase.
  
    0.632
yclF
Putative oligo-peptide transporter.
  
    0.631
yfiL
ABC transporter YfiL.
      
 0.624
recX
Conserved protein RecX; Modulates RecA activity; Belongs to the RecX family.
       0.614
yfhH
Conserved protein YfhH.
       0.614
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.