STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfhPPredicted membrane-bound metal-dependent hydrolase; Negative regulator of yfhQ, fabL, sspE and yfhP. (327 aa)    
Predicted Functional Partners:
ytpQ
Conserved protein YtpQ; Belongs to the UPF0354 family.
  
     0.762
ytkD
Putative hydrolase YtkD; Belongs to the Nudix hydrolase family.
  
     0.698
rsbU
Serine phosphatase.
  
     0.602
ymcA
Conserved hypothetical protein; Belongs to the UPF0342 family.
  
     0.594
comK
Competence transcription factor ComK.
  
     0.593
ytxG
Conserved protein YtxG.
  
     0.589
BL02929
Hypothetical protein.
  
     0.587
ylbF
YlbF; Belongs to the UPF0342 family.
  
     0.587
yfhQ
Putative A/G-specific adenine glycosylase YfhQ; Adenine glycosylase active on G-A mispairs.
       0.556
rsbW
Switch protein/serine kinase and anti-sigma factor (inhibitory sigma-B binding protein); Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B).
  
     0.553
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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