STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yflNBeta-lactamase-like protein YflN. (264 aa)    
Predicted Functional Partners:
yrkF
YrkF; Belongs to the sulfur carrier protein TusA family.
  
 0.838
ykcA
Glyoxalase/Bleomycin resistance protein/dioxygenase domain superfamily protein.
   
 
  0.717
BL03097
Beta-lactamase-like protein.
 
  
  0.703
BL02060
Metallo-beta-lactamase/rhodanese-like domain protein.
  
  0.583
adhB
Alcohol dehydrogenase.
 
    0.507
yrkH
Conserved protein YrkH.
   
  0.506
citM
Secondary transporter of divalent metal ions/citrate complexes.
   
    0.504
dhbF
DhbF.
   
 
 0.468
BL00160
Hypothetical Bipartite response regulator, C-terminal effector.
    
   0.461
lchAA
Lichenysin synthetase A.
    
 
 0.457
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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