STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfkMGeneral stress protein YfkM. (171 aa)    
Predicted Functional Partners:
sigB
RNA polymerase sigma-37 factor (sigma-B); Belongs to the sigma-70 factor family.
   
  
 0.827
rsbW
Switch protein/serine kinase and anti-sigma factor (inhibitory sigma-B binding protein); Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B).
   
    0.793
ykcA
Glyoxalase/Bleomycin resistance protein/dioxygenase domain superfamily protein.
  
 
  0.747
yrkH
Conserved protein YrkH.
    
  0.740
BL02060
Metallo-beta-lactamase/rhodanese-like domain protein.
    
  0.740
serA
Phosphoglycerate dehydrogenase SerA; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
 
  0.727
BL02965
Putative intracellular protease; Possible ThiJ family.
  
     0.689
yflT
Conserved hypothetical protein YflT; General stress protein.
   
  
 0.678
yojM
Copper/Zinc superoxide dismutase.
  
 
 0.660
katX
Major catalase in spores; Belongs to the catalase family.
  
  0.654
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.