STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yfkJProtein-tyrosine phosphatase YfkJ; Low molecular weight phosphotyrosine protein phosphatase. (157 aa)    
Predicted Functional Partners:
yfkI
YfkI.
  
    0.969
yfkH
Possible RNase; Belongs to the UPF0761 family.
  
  
 0.946
yrkH
Conserved protein YrkH.
   
   0.723
BL02060
Metallo-beta-lactamase/rhodanese-like domain protein.
   
   0.723
ywqE
Protein tyrosine phoshpatase.
      
 0.704
maf
Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
 
    0.694
ykgA
Putative transferase, conserved hypothetical protein.
   
   0.653
rsbW
Switch protein/serine kinase and anti-sigma factor (inhibitory sigma-B binding protein); Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B).
   
    0.622
ydaG
FMN-binding split barrel domain protein YdaG.
   
    0.620
yfkE
H+/Ca2+ exchanger YfkE; Ca(+)/H(+) antiporter that extrudes calcium in exchange for external protons.
   
    0.616
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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