STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yfkHPossible RNase; Belongs to the UPF0761 family. (271 aa)    
Predicted Functional Partners:
yfkJ
Protein-tyrosine phosphatase YfkJ; Low molecular weight phosphotyrosine protein phosphatase.
  
  
 0.946
yfkI
YfkI.
  
    0.942
yfkE
H+/Ca2+ exchanger YfkE; Ca(+)/H(+) antiporter that extrudes calcium in exchange for external protons.
  
    0.635
yflA
Sodium:alanine symporter YflA.
  
    0.621
ywlE
Low molecular weight phosphotyrosine protein phosphatase.
  
  
 0.611
ywtG-2
Sugar transporter YwtG; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
   
    0.605
ykgA
Putative transferase, conserved hypothetical protein.
   
    0.602
yfkK
Conserved protein YfkK; Belongs to the UPF0435 family.
       0.556
BL03112
Putative Sodium:aminoacid symporter.
  
    0.520
yqhB
2-oxo acid dehydrogenase, lipoyl-binding site protein.
  
    0.507
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.