STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfkDConserved protein YfkD. (263 aa)    
Predicted Functional Partners:
yfkE
H+/Ca2+ exchanger YfkE; Ca(+)/H(+) antiporter that extrudes calcium in exchange for external protons.
  
  
 0.844
yutH
Conserved protein YutH.
  
     0.772
yqfQ
Tubulin YqfQ.
  
     0.771
BL05248
Hypothetical protein.
  
     0.771
yjbA
Conserved protein YjbA; Belongs to the UPF0736 family.
  
     0.769
yqhR
Conserved membrane protein YqhR.
  
     0.765
ylbE
Hypothetical protein.
  
     0.764
ylbD
Hypothetical protein.
  
     0.763
yabQ
Essential protein for formation of the spore cortex YabQ.
  
     0.758
yaaC
Conserved protein YaaC.
  
     0.757
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.