STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfjTConserved protein YfjT. (61 aa)    
Predicted Functional Partners:
yfkA
Conserved protein YfkA.
 
     0.711
yfhJ
Conserved protein YfhJ.
  
     0.628
ywjG
YwjG.
  
     0.598
yqgW
Conserved protein YqgW.
  
     0.593
BL03724
Conserved protein with HAD-like hydrolase domain; Belongs to the 5'(3')-deoxyribonucleotidase family.
  
     0.593
ywmF
YwmF.
  
     0.571
pdaA
Putative Carbohydrate Esterase Family 4.
       0.570
yccF
Conserved hypothetical protein.
  
     0.557
yceG
Conserved hypothetical protein YceG.
  
     0.505
BL01994
DNA binding domain, excisionase family protein.
  
     0.505
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.