STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ydhEUDP-glycosyltransferase,Glycosyl Transferase Family 1, YdhE. (404 aa)    
Predicted Functional Partners:
dhbF
DhbF.
 
  
 0.839
lchAB
Lichenysin synthetase B.
 
  
 0.710
lchAA
Lichenysin synthetase A.
 
  
 0.687
nucB
Nuclease.
  
     0.612
nucA
Nuclease NucA.
  
     0.607
fosB
Putative metallothiol transferase Fosfomycin resistance protein; Metallothiol transferase which confers resistance to fosfomycin by catalyzing the addition of a thiol cofactor to fosfomycin. L-cysteine is probably the physiological thiol donor. Belongs to the fosfomycin resistance protein family. FosB subfamily.
      
 0.587
ydhT
Glutamine amidotransferase, class-II; Belongs to the glycosyl hydrolase 26 family.
  
     0.560
yckD
Hypothetical protein.
       0.559
yvkB
Probable transcriptional regulator (TetR/AcrR family).
       0.542
chi
Conserved protein, Glycoside Hydrolase Family 18; Chitnase; Belongs to the glycosyl hydrolase 18 family.
  
  
 0.536
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.