STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfkFPutative transcriptional regulator YfkF; Similar to multidrug-efflux transporter. (392 aa)    
Predicted Functional Partners:
BL03084
Putative stress response protein; OsmC-like protein.
       0.605
fer
Ferredoxin.
  
     0.554
BL02929
Hypothetical protein.
  
     0.552
yfhP
Predicted membrane-bound metal-dependent hydrolase; Negative regulator of yfhQ, fabL, sspE and yfhP.
  
     0.533
ygxA
Conserved protein YgxA.
  
     0.477
ytxG
Conserved protein YtxG.
  
     0.466
metH
Putative 5-methyltetrahydrofolate--homocysteine methyltransferase MetH; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.465
ytpQ
Conserved protein YtpQ; Belongs to the UPF0354 family.
  
     0.464
yfkE
H+/Ca2+ exchanger YfkE; Ca(+)/H(+) antiporter that extrudes calcium in exchange for external protons.
       0.463
ymcA
Conserved hypothetical protein; Belongs to the UPF0342 family.
  
     0.453
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.