STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yuiCConserved protein YuiC. (224 aa)    
Predicted Functional Partners:
yuiB
Conserved membrane protein YuiB.
 
     0.729
xkdP
Hypothetical phage related protein.
   
  
 0.724
ytxC
Conserved protein YtxC.
 
     0.542
yqhR
Conserved membrane protein YqhR.
  
     0.541
yqgE
Sugar transporter superfamily.
  
     0.530
lytD
N-acetylglucosaminidase (major autolysin), Glycoside Hydrolase Family 73.
   
    0.514
ylaJ
Hypothetical protein.
  
     0.487
BL03704
Conserved hypothetical protein.
  
     0.482
ytrI
Conserved protein YtrI.
  
     0.459
gerPD
Spore germination protein.
  
     0.458
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.