STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yumBFAD-dependent pyridine nucleotide-disulphide oxidoreductase YumB. (403 aa)    
Predicted Functional Partners:
ndhF
NADH dehydrogenase (subunit 5).
   
 
 0.666
yutJ
Putative NADH dehydrogenase YutJ.
  
  
 
0.655
cydD
ABC membrane transporter (ATP-binding protein).
 
   
 0.635
cydA
Cytochrome bd ubiquinol oxidase (subunit I).
 
   
 0.633
cydB
Cytochrome bd ubiquinol oxidase (subunit II).
 
   
 0.625
cydC
ABC membrane transporter (ATP-binding protein).
 
     0.617
ctaC
Cytochrome caa3 oxidase (subunit II); Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
 
 0.607
yjlD
Aminotransferase, class IV YjlD.
  
  
 
0.606
ythA
Cytochrome bd ubiquinol oxidase, subunit I.
 
   
 0.536
menA
1,4-dihydroxy-2-naphthoate octaprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily.
 
 
  0.531
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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