STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yumBFAD-dependent pyridine nucleotide-disulphide oxidoreductase YumB. (403 aa)    
Predicted Functional Partners:
yutJ
Putative NADH dehydrogenase YutJ.
 
  
 
0.924
yjlD
Aminotransferase, class IV YjlD.
  
  
 
0.913
cydA
Cytochrome bd ubiquinol oxidase (subunit I).
 
   
 0.643
gltA
Glutamate synthase (large subunit).
      
 0.643
cydD
ABC membrane transporter (ATP-binding protein).
 
   
 0.626
cydB
Cytochrome bd ubiquinol oxidase (subunit II).
 
   
 0.620
cydC
ABC membrane transporter (ATP-binding protein).
 
     0.619
ythA
Cytochrome bd ubiquinol oxidase, subunit I.
 
   
 0.549
glpD
Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
   
 
 0.491
yuiA
Conserved protein YuiA.
       0.446
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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