STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yuzBConserved protein YuzB; Belongs to the UPF0349 family. (78 aa)    
Predicted Functional Partners:
yuzD
Conserved protein YuzD.
 
     0.759
yutJ
Putative NADH dehydrogenase YutJ.
     
 0.749
yheB
Conserved hypothetical protein YheB.
  
     0.671
ygaE
Conserved hypothetical protein YgaE.
  
     0.623
yutE
Conserved protein YutE.
  
     0.604
ylbF
YlbF; Belongs to the UPF0342 family.
  
     0.604
ywiB
Conserved protein YwiB.
      
 0.572
ymcA
Conserved hypothetical protein; Belongs to the UPF0342 family.
  
     0.559
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
       0.543
yfhJ
Conserved protein YfhJ.
  
     0.539
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.