STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yhcXConserved hypothetical protein YhcX. (512 aa)    
Predicted Functional Partners:
yhcW
HAD-superfamily hydrolase YhcW.
  
   0.917
dhaS
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
 0.747
guaA
GMP synthetase; Catalyzes the synthesis of GMP from XMP.
     
 0.605
acsA
acetyl-CoA synthetase.
  
 
 0.579
ytcI
AMP-dependent synthetase and ligase YtcI.
  
 
 0.579
BL01993
acetyl-CoA synthetase.
  
 
 0.579
cinA
Competence-damage inducible protein; Belongs to the CinA family.
  
  
 0.567
gltA
Glutamate synthase (large subunit).
     
 0.544
ribD
Riboflavin-specific deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.530
BL02059
Putative oxidoreductase.
  
    0.511
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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