STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yitVConserved protein,putative esterase YitV. (255 aa)    
Predicted Functional Partners:
yitW
N-6 Adenine-specific DNA methylase YitW.
       0.640
yitU
Putative hydrolase YitU.
  
    0.600
rex
Redox regulator Rex; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.
   
    0.553
ribT
Reductase.
  
     0.540
yolF
Phospholipase/carboxylesterase family protein.
     
 0.510
BL03108
Putative glycosyl transferase family 2/4 protein.
   
   0.493
BL00057
Putative sugar transferase, Glycosyl Transferase Family 4.
    
   0.480
BL00693
Putative glycosyl transferase Family 4.
    
   0.480
yaaC
Conserved protein YaaC.
    
   0.480
BL02462
Glycosyl transferase family 4.
    
   0.480
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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