STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ytkCConserved membrane protein YtkC. (134 aa)    
Predicted Functional Partners:
BL00875
Phage related protein.
 
  
 0.778
BL03502
Hypothetical phagelike protein.
 
   
 0.761
BL00881
Phage related putative head portal protein.
 
   
 0.755
BL03287
Putative hydrolase.
       0.739
BL03501
Hypothetical protein.
 
     0.673
BL00969
Phage related protein.
 
    0.663
BL00882
Phage related, putative terminase large sub-unit.
 
     0.650
BL05345
Putative electron transporter.
 
    0.609
BL03510
Putative phagelike major tail protein.
 
  
 0.589
BL03507
Hypothetical phagelike protein.
 
    0.581
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.