STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytkDPutative hydrolase YtkD; Belongs to the Nudix hydrolase family. (158 aa)    
Predicted Functional Partners:
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 
  0.778
cinA
Competence-damage inducible protein; Belongs to the CinA family.
    
  0.777
ytpQ
Conserved protein YtpQ; Belongs to the UPF0354 family.
  
    0.768
metH
Putative 5-methyltetrahydrofolate--homocysteine methyltransferase MetH; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
 0.754
yjbH
Conserved protein YjbH; Belongs to the UPF0413 family.
  
     0.738
ytlQ
Conserved protein YtlQ.
  
     0.732
guaA
GMP synthetase; Catalyzes the synthesis of GMP from XMP.
    
  0.719
comK
Competence transcription factor ComK.
  
     0.716
yjbA
Conserved protein YjbA; Belongs to the UPF0736 family.
  
     0.701
yfhP
Predicted membrane-bound metal-dependent hydrolase; Negative regulator of yfhQ, fabL, sspE and yfhP.
  
     0.698
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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