STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ypmSConserved protein YpmS. (190 aa)    
Predicted Functional Partners:
ypmR
Conserved protein YpmR.
 
  
 0.971
ypmT
YpmT.
  
    0.832
ycsK
Lipolytic enzyme, G-D-S-L; Lipase involved in spore germination; Belongs to the 'GDSL' lipolytic enzyme family.
 
  
 0.758
BL02233
Bipartite response regulator, C-terminal effector.
  
     0.719
ypiA
TPR-repeat containing conserved hypothetical protein.
  
     0.626
yozE
Hypothetical protein; Belongs to the UPF0346 family.
 
   
 0.603
yjbF
Conserved protein YjbF.
  
     0.588
degVA
DegVA.
  
  
 0.563
ypmQ
Conserved hypothetical YpmQ; Biological Process: electron transport.
       0.544
yneB
Resolvase, N-terminal domain - putative recombinase YneB.
  
     0.534
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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