STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppAOligopeptide ABC transporter (binding protein). (541 aa)    
Predicted Functional Partners:
oppC
Oligopeptide ABC transporter (permease).
 
 0.987
oppB
Oligopeptide ABC transporter (permease).
 
 0.977
oppD
Oligopeptide ABC transporter (ATP-binding protein); Belongs to the ABC transporter superfamily.
 
 
 0.974
oppF
Oligopeptide ABC transporter (ATP-binding protein); Belongs to the ABC transporter superfamily.
 
 
 0.957
dppB
Dipeptide ABC transporter (permease).
 
 0.886
dppC
Dipeptide ABC transporter (permease).
 
 0.874
ykfD
Oligopeptide/dipeptide ABC transporter YkfD; Belongs to the ABC transporter superfamily.
 
 
 0.783
dppD
Dipeptide ABC transporter (ATP-binding protein); Belongs to the ABC transporter superfamily.
 
 
 0.737
appF
Oligopeptide ABC transporter (ATP-binding protein); Belongs to the ABC transporter superfamily.
 
 
 0.693
appC
Oligopeptide ABC transporter (permease).
 
 0.673
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.