Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oppBOligopeptide ABC transporter (permease). (311 aa)    
Predicted Functional Partners:
oppC
Oligopeptide ABC transporter (permease).
 0.999
oppD
Oligopeptide ABC transporter (ATP-binding protein); Belongs to the ABC transporter superfamily.
 
 0.999
oppF
Oligopeptide ABC transporter (ATP-binding protein); Belongs to the ABC transporter superfamily.
 
 0.999
oppA
Oligopeptide ABC transporter (binding protein).
 
 0.998
dppC
Dipeptide ABC transporter (permease).
 
 0.926
appC
Oligopeptide ABC transporter (permease).
 
 0.919
appCA
Oligopeptide ABC transporter (permease).
 
 
 0.915
dppE
Dipeptide ABC transporter (dipeptide-binding protein).
 
 
 0.915
appCB
Oligopeptide ABC transporter (permease).
 
 
 0.914
ykfD
Oligopeptide/dipeptide ABC transporter YkfD; Belongs to the ABC transporter superfamily.
 
 
 0.885
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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