STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yvyFYvyF. (139 aa)    
Predicted Functional Partners:
flgM
Anti-sigma factor repressor of sigma-D-dependent transcription.
 
 
 0.993
yvyG
YvyG.
 
  
 0.993
flgK
Flagellar hook-associated protein 1.
 
  
 0.934
yviE
Conserved protein YviE.
 
  
 0.932
flgL
Flagellar hook-associated protein 3.
 
  
 0.928
acuC
Acetoin dehydrogenase.
    
 0.827
BL00458
Hypothetical protein.
    
 0.823
ppiB
Peptidyl-prolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
  0.810
rpmD
Ribosomal protein L30 (BL27).
   
  0.798
yaaR
Conserved hypothetical protein YaaR.
 
     0.793
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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