Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| csrA | flgK | BL03373 | BL03369 | Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | Flagellar hook-associated protein 1. | 0.883 |
| csrA | flgL | BL03373 | BL03370 | Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | Flagellar hook-associated protein 3. | 0.906 |
| csrA | flgM | BL03373 | BL03367 | Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | Anti-sigma factor repressor of sigma-D-dependent transcription. | 0.753 |
| csrA | yviE | BL03373 | BL03371 | Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | Conserved protein YviE. | 0.804 |
| csrA | yviF | BL03373 | BL03372 | Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | Conserved protein YviF; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. | 0.999 |
| csrA | yvyC | BL03373 | BL03375 | Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | Flagellar protein YvyC. | 0.711 |
| csrA | yvyF | BL03373 | BL03366 | Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | YvyF. | 0.502 |
| csrA | yvyG | BL03373 | BL03368 | Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | YvyG. | 0.633 |
| flgK | csrA | BL03369 | BL03373 | Flagellar hook-associated protein 1. | Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.883 |
| flgK | flgL | BL03369 | BL03370 | Flagellar hook-associated protein 1. | Flagellar hook-associated protein 3. | 0.997 |
| flgK | flgM | BL03369 | BL03367 | Flagellar hook-associated protein 1. | Anti-sigma factor repressor of sigma-D-dependent transcription. | 0.970 |
| flgK | fliZ | BL03369 | BL01259 | Flagellar hook-associated protein 1. | Flagellar protein. | 0.925 |
| flgK | yviE | BL03369 | BL03371 | Flagellar hook-associated protein 1. | Conserved protein YviE. | 0.809 |
| flgK | yviF | BL03369 | BL03372 | Flagellar hook-associated protein 1. | Conserved protein YviF; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. | 0.964 |
| flgK | yvyC | BL03369 | BL03375 | Flagellar hook-associated protein 1. | Flagellar protein YvyC. | 0.804 |
| flgK | yvyF | BL03369 | BL03366 | Flagellar hook-associated protein 1. | YvyF. | 0.875 |
| flgK | yvyG | BL03369 | BL03368 | Flagellar hook-associated protein 1. | YvyG. | 0.994 |
| flgL | csrA | BL03370 | BL03373 | Flagellar hook-associated protein 3. | Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.906 |
| flgL | flgK | BL03370 | BL03369 | Flagellar hook-associated protein 3. | Flagellar hook-associated protein 1. | 0.997 |
| flgL | flgM | BL03370 | BL03367 | Flagellar hook-associated protein 3. | Anti-sigma factor repressor of sigma-D-dependent transcription. | 0.942 |
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