STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctpBPeptidase S41A, C-terminal protease; Belongs to the peptidase S41A family. (479 aa)    
Predicted Functional Partners:
cwlC
N-acetylmuramoyl-L-alanine amidase.
  
 0.870
yrvJ
N-acetylmuramoyl-L-alanine amidase YrvJ.
  
 
 0.862
lytC
N-acetylmuramoyl-L-alanine amidase (major autolysin) (CWBP49).
  
 
 0.851
cel12A
Glycoside Hydrolase Family 12; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
   
 
  0.737
yetA
Conserved hypothetical protein; Molecular Function: carboxypeptidase A activity, Biological Process: proteolysis and peptidolysis.
   
 
  0.737
yesX
Polysaccharide lyase Family 11.
   
 
  0.737
yesW
Putative polysaccharide lyase family 11 protein.
   
 
  0.737
secDF
Protein-export membrane protein SecDF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
   
 0.729
BL03388
Conserved hypothetical protein.
 
 
 
 0.722
yluC
Intramembrane zinc metallopeptidase YluC; Is responsible for Site-2 cleavage of the RsiW anti-sigma factor. This results, after a third proteolytic step catalyzed by the ClpXP protease, in the release of SigW and the transcription activation of the genes under the control of the sigma-W factor (By similarity).
 
  
 0.643
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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