STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yvlDConserved membrane protein YvlD. (119 aa)    
Predicted Functional Partners:
yvlC
PspC.
  
    0.955
yvlB
Conserved hypothetical protein YvlB.
  
  
 0.951
yvlA
YvlA.
  
    0.816
yvnB
YvnB.
       0.585
yqeZ
Intermembrane protease YqeZ.
   
  
 0.481
yvkN
YvkN.
       0.477
yngB
UTP--glucose-1-phosphate uridylyltransferase YngB.
     
 0.471
pbpX
Penicillin-binding protein.
   
  
 0.455
liaG
Conserved protein LiaG.
  
  
 0.415
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.