STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
yvcINUDIX hydrolase. (154 aa)    
Predicted Functional Partners:
yvcK
Conserved hypothetical protein YvcK; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
  
    0.859
yvcJ
Uncharacterised P-loop ATPase protein family UPF0042; Displays ATPase and GTPase activities.
  
  
 0.831
yvcL
Conserved protein YvcL; Involved in cell division and chromosome segregation.
  
  
 0.794
crh
Catabolite repression protein.
  
    0.730
nat
Arylamine N-acetyltransferase; Belongs to the arylamine N-acetyltransferase family.
     
 0.665
trxB
Thioredoxin reductase.
  
  
 0.537
mutT
Mutator protein.
  
   
 0.500
BL07063
Hypothetical protein; BLi03727.
       0.475
ytzE
Probable transcriptional regulator YtzE.
  
     0.471
spoIIIAH
SpoIIIAH.
  
   
 0.446
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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