STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yvdACarbonic anhydrase, prokaryotic YvdA. (196 aa)    
Predicted Functional Partners:
yvdB
Sulfate transporter/antisigma-factor antagonist.
  
 
 0.921
BL01783
Putative carbonic anhyrdase.
    
 0.744
ytoA
Conserved protein YtoA.
    
 0.711
yvcT
Probable 2-ketogluconate reductase YvcT; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.702
ywcJ
Formate/nitrite transporter.
  
    0.623
yrhG
Putative formate-nitrite transporter.
  
    0.623
ydfE
Hypothetical protein.
      
 0.573
ydfF
Hypothetical protein.
      
 0.573
BL00917
Conserved hypothetical protein; Belongs to the UPF0753 family.
  
    0.570
yvcK
Conserved hypothetical protein YvcK; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
      
 0.566
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.