STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yvdBSulfate transporter/antisigma-factor antagonist. (539 aa)    
Predicted Functional Partners:
yvdA
Carbonic anhydrase, prokaryotic YvdA.
  
  
 0.919
yvcT
Probable 2-ketogluconate reductase YvcT; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.808
BL00458
Hypothetical protein.
    
 
 0.750
ydfF
Hypothetical protein.
     
 0.730
ydfE
Hypothetical protein.
      
 0.713
sbcD
Exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
   
   0.688
yhaO
Conserved hypothetical protein YhaO; Molecular Function: hydrolase activity.
   
   0.688
yvcK
Conserved hypothetical protein YvcK; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
      
 0.670
nat
Arylamine N-acetyltransferase; Belongs to the arylamine N-acetyltransferase family.
      
 0.610
yvcJ
Uncharacterised P-loop ATPase protein family UPF0042; Displays ATPase and GTPase activities.
      
 0.557
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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