STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yvfFPolysaccharide pyruvyl transferase YvfF. (325 aa)    
Predicted Functional Partners:
yvfE
Putative polysaccharide biosynthesis protein YvfE; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.984
yvfC
Putative sugar transferase YvfC.
  
    0.948
yveS
Putative Polysaccharide pyruvyl transferase YveS.
 
   
0.934
BL03448
YvfB.
 
  
 0.925
yveR
Polysaccharide biosynthesis protein, Glycosyl transferase Family 2,YveR.
  
  
 0.924
yveK
Putative capsular polysaccharide biosynthesis protein YveK.
 
  
 0.923
yvfD
Acetyltransferase, possible polysaccharide biosynthesis protein YvfD.
  
  
 0.921
yveQ
Putative capsular polysaccharide biosynthesis protein YveQ.
 
    0.883
yveO
Putative exopolysaccharide biosynthesis protein, Glycosyl Transferase Family 2,YveO.
  
  
 0.865
yveM
Putative capsular polysaccharide biosynthesis protein YveM.
  
  
 0.854
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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