STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yvfIProbable transcriptional regulator YvfI. (246 aa)    
Predicted Functional Partners:
ydhC
Putative regulatory protein.
  
  
 0.755
yvfH
Putative L-lactate permease YvfH; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
 
  
 0.751
BL00689
Probable transcriptional regulator.
  
  
 0.722
yvfV
YvfV; Is involved in L-lactate degradation and allows cells to grow with lactate as the sole carbon source.
 
  
 0.713
yvbY
YvbY; Is involved in L-lactate degradation and allows cells to grow with lactate as the sole carbon source.
 
   
 0.701
yvfW
Iron-sulfur cluster binding protein YvfW; Is involved in L-lactate degradation and allows cells to grow with lactate as the sole carbon source. Has probably a role as an electron transporter during oxidation of L-lactate.
 
   
 0.693
BL03848
Transcriptional regulator (IclR family).
  
  
 0.545
ybgA
Transcriptional regulator.
  
    0.530
BL03958
Transcriptional regulator (IclR family).
  
  
 0.526
yvoA
Putative transcriptional regulator (GntR family) YvoA.
  
    0.504
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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