STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opuCCGlycine betaine/carnitine/choline ABC transporter (osmoprotectant-binding protein). (305 aa)    
Predicted Functional Partners:
opuCB
Glycine betaine/carnitine/choline ABC transporter (membrane protein).
 
 0.999
opuCD
Glycine betaine/carnitine/choline ABC transporter (membrane protein).
 
 0.999
opuCA
ABC transporter.
 
 0.998
BL01723
Multiple sugar-binding transport ATP-binding protein; BL01723 similar to msmX from Bacillus subtilis; Belongs to the ABC transporter superfamily.
  
 
  0.728
opuAC
Glycine betaine ABC transporter (glycine betaine-binding protein).
   
 
 0.714
opuAB
Glycine betaine ABC transporter (permease).
 
  
 0.664
acuB
Acetoin dehydrogenase.
    
  0.599
yfiM
ABC transport system permease protein.
  
  
  0.454
yhdY
Putative mechanosensitive ion channel protein, conserved hypothetical YhdY.
   
  
 0.435
yvbF
Conserved protein YvbF; Belongs to the GbsR family.
  
  
 0.434
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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