STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ykoYIntegral membrane protein. (255 aa)    
Predicted Functional Partners:
yybP
YybP.
   
  
 0.902
yeaB
Probable cation efflux system membrane protein; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
     
 0.731
ywlD
YwlD; Probably functions as a manganese efflux pump. Belongs to the MntP (TC 9.B.29) family.
      
 0.724
mntR
Transcriptional regulator; Central regulator of manganese homeostasis. Belongs to the DtxR/MntR family.
      
 0.701
mntH
Manganese transporter; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family.
      
 0.622
yceC
Putative stress response protein YceC.
  
  
 0.589
ylbH
Adenine-specific DNA methylase.
      
 0.517
sigI
RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; Belongs to the sigma-70 factor family. SigI subfamily.
       0.499
ykrI
Conserved hypothetical protein.
       0.453
yceH
Putative signal peptide binding protein YceH; Belongs to the TelA family.
  
    0.447
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.