STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ykrIConserved hypothetical protein. (363 aa)    
Predicted Functional Partners:
sigI
RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; Belongs to the sigma-70 factor family. SigI subfamily.
 
 
 0.997
yluC
Intramembrane zinc metallopeptidase YluC; Is responsible for Site-2 cleavage of the RsiW anti-sigma factor. This results, after a third proteolytic step catalyzed by the ClpXP protease, in the release of SigW and the transcription activation of the genes under the control of the sigma-W factor (By similarity).
      
 0.597
folC
Folyl-polyglutamate synthetase; Belongs to the folylpolyglutamate synthase family.
  
    0.533
tasA
Translocation-dependent antimicrobial spore component.
  
     0.498
yveQ
Putative capsular polysaccharide biosynthesis protein YveQ.
  
     0.474
ydaN
Putative cellulose synthase.
 
   
 0.461
yclG
Pectin lyase-like protein.
  
     0.461
yknT
sigma-E controlled sporulation protein.
  
     0.456
ykoY
Integral membrane protein.
       0.453
ipi
Intracellular proteinase inhibitor Ipi.
  
     0.441
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.