STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ykrIConserved hypothetical protein. (363 aa)    
Predicted Functional Partners:
sigI
RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; Belongs to the sigma-70 factor family. SigI subfamily.
 
 
 0.990
yrvJ
N-acetylmuramoyl-L-alanine amidase YrvJ.
    
  0.744
folC
Folyl-polyglutamate synthetase; Belongs to the folylpolyglutamate synthase family.
  
    0.598
blaI
Putative beta-lactamase repressor protein.
    
  0.568
yvrI
YvrI.
  
 
 0.511
sigD
RNA polymerase sigma-28 factor (sigma-D); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
 
 0.511
sigB
RNA polymerase sigma-37 factor (sigma-B); Belongs to the sigma-70 factor family.
  
 
 0.511
cwlC
N-acetylmuramoyl-L-alanine amidase.
    
 0.500
tasA
Translocation-dependent antimicrobial spore component.
  
     0.498
ydaN
Putative cellulose synthase.
 
   
 0.492
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.