STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
ccpCTranscriptional regulator; Belongs to the LysR transcriptional regulatory family. (291 aa)    
Predicted Functional Partners:
ccpN
Putative transcriptional repressor CcpN.
   
  
 0.606
ykuL
CBS domain protein YkuL.
  
    0.597
ykuQ
Tetrahydrodipicolinate succinylase; Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate.
       0.535
ykuO
Glycoside hydrolase.
       0.524
BL05240
Putative riboflavin uptake protein; Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins; Belongs to the prokaryotic riboflavin transporter (P-RFT) (TC 2.A.87) family.
  
     0.519
xpaC
XpaC.
  
     0.509
ykuN
Flavodoxin, short chain; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family.
       0.506
ykuR
Peptidase M20D, amidohydrolase YkuR; Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate.
       0.497
gltA
Glutamate synthase (large subunit).
     
 0.482
ykuP
Flavodoxin, short chain.
       0.459
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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