STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yvbFConserved protein YvbF; Belongs to the GbsR family. (179 aa)    
Predicted Functional Partners:
ykyA
Putative transcription factor,conserved hypothetical.
  
     0.608
yyaD
Conserved hypothetical membrane protein YyaD.
  
     0.540
BL01876
Hypothetical protein.
  
     0.538
opuCA
ABC transporter.
  
  
 0.522
ycbP
Hypothetical protein.
  
     0.520
yjbC
GCN5-related N-acetyltransferase.
  
     0.500
rapI
Putative response regulator aspartate phosphatase.
      
 0.478
opuCB
Glycine betaine/carnitine/choline ABC transporter (membrane protein).
  
  
 0.466
ylqG
Conserved hypothetical protein.
  
     0.450
opuCC
Glycine betaine/carnitine/choline ABC transporter (osmoprotectant-binding protein).
  
  
 0.434
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.