Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ligB | ykoU | BL00865 | BL03626 | DNA ligase,phage related. | ATP-dependent DNA ligase. | 0.715 |
| ligB | ykoV | BL00865 | BL03627 | DNA ligase,phage related. | Cytochrome c heme-binding site protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.854 |
| ydaD | ykoV | BL02817 | BL03627 | Putative Short-chain dehydrogenase/reductase YdaD; Similar to alcohol dehydrogenase. | Cytochrome c heme-binding site protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.409 |
| yhdF | ykoV | BL02889 | BL03627 | Short-chain dehydrogenase/reductase SDR YhdF. | Cytochrome c heme-binding site protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.404 |
| ykoU | ligB | BL03626 | BL00865 | ATP-dependent DNA ligase. | DNA ligase,phage related. | 0.715 |
| ykoU | ykoV | BL03626 | BL03627 | ATP-dependent DNA ligase. | Cytochrome c heme-binding site protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.993 |
| ykoU | ykoW | BL03626 | BL03628 | ATP-dependent DNA ligase. | GGDEF, sensory domain containing protein. | 0.697 |
| ykoV | ligB | BL03627 | BL00865 | Cytochrome c heme-binding site protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | DNA ligase,phage related. | 0.854 |
| ykoV | ydaD | BL03627 | BL02817 | Cytochrome c heme-binding site protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | Putative Short-chain dehydrogenase/reductase YdaD; Similar to alcohol dehydrogenase. | 0.409 |
| ykoV | yhdF | BL03627 | BL02889 | Cytochrome c heme-binding site protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | Short-chain dehydrogenase/reductase SDR YhdF. | 0.404 |
| ykoV | ykoU | BL03627 | BL03626 | Cytochrome c heme-binding site protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | ATP-dependent DNA ligase. | 0.993 |
| ykoV | ykoW | BL03627 | BL03628 | Cytochrome c heme-binding site protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | GGDEF, sensory domain containing protein. | 0.722 |
| ykoW | ykoU | BL03628 | BL03626 | GGDEF, sensory domain containing protein. | ATP-dependent DNA ligase. | 0.697 |
| ykoW | ykoV | BL03628 | BL03627 | GGDEF, sensory domain containing protein. | Cytochrome c heme-binding site protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.722 |