ykoV protein (Bacillus licheniformis) - STRING interaction network

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ykoV

Cytochrome c heme-binding site protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. (290 aa)

Predicted Functional Partners:

ykoU

0.998

ligB

0.874

ykoW

0.680

ydaD

0.409

yojM

0.405

yhdF

0.404

Your Current Organism:

Bacillus licheniformis

NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ligB	ykoU	BL00865	BL03626	DNA ligase,phage related.	ATP-dependent DNA ligase.	0.484
ligB	ykoV	BL00865	BL03627	DNA ligase,phage related.	Cytochrome c heme-binding site protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	0.874
ydaD	ykoV	BL02817	BL03627	Putative Short-chain dehydrogenase/reductase YdaD; Similar to alcohol dehydrogenase.	Cytochrome c heme-binding site protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	0.409
yhdF	ykoV	BL02889	BL03627	Short-chain dehydrogenase/reductase SDR YhdF.	Cytochrome c heme-binding site protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	0.404
ykoU	ligB	BL03626	BL00865	ATP-dependent DNA ligase.	DNA ligase,phage related.	0.484
ykoU	ykoV	BL03626	BL03627	ATP-dependent DNA ligase.	Cytochrome c heme-binding site protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	0.998
ykoU	ykoW	BL03626	BL03628	ATP-dependent DNA ligase.	GGDEF, sensory domain containing protein.	0.736
ykoU	yojM	BL03626	BL01449	ATP-dependent DNA ligase.	Copper/Zinc superoxide dismutase.	0.503
ykoV	ligB	BL03627	BL00865	Cytochrome c heme-binding site protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	DNA ligase,phage related.	0.874
ykoV	ydaD	BL03627	BL02817	Cytochrome c heme-binding site protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	Putative Short-chain dehydrogenase/reductase YdaD; Similar to alcohol dehydrogenase.	0.409
ykoV	yhdF	BL03627	BL02889	Cytochrome c heme-binding site protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	Short-chain dehydrogenase/reductase SDR YhdF.	0.404
ykoV	ykoU	BL03627	BL03626	Cytochrome c heme-binding site protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	ATP-dependent DNA ligase.	0.998
ykoV	ykoW	BL03627	BL03628	Cytochrome c heme-binding site protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	GGDEF, sensory domain containing protein.	0.680
ykoV	yojM	BL03627	BL01449	Cytochrome c heme-binding site protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	Copper/Zinc superoxide dismutase.	0.405
ykoW	ykoU	BL03628	BL03626	GGDEF, sensory domain containing protein.	ATP-dependent DNA ligase.	0.736
ykoW	ykoV	BL03628	BL03627	GGDEF, sensory domain containing protein.	Cytochrome c heme-binding site protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	0.680
yojM	ykoU	BL01449	BL03626	Copper/Zinc superoxide dismutase.	ATP-dependent DNA ligase.	0.503
yojM	ykoV	BL01449	BL03627	Copper/Zinc superoxide dismutase.	Cytochrome c heme-binding site protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	0.405

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