STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ykuETwin-arginine translocation pathway signal YkuE. (285 aa)    
Predicted Functional Partners:
ykuD
Peptidoglycan-binding protein YkuD; Probable enzyme that may play an important role in cell wall biology.
       0.759
BL07028
Hypothetical protein; BLi01618.
       0.741
ykuF
Short-chain dehydrogenase/reductase YkuF.
       0.582
ykuC
Drug antiporter protein YkuC.
       0.523
phoD
Phosphodiesterase/alkaline phosphatase D.
      
 0.509
ykuI
YkuI.
       0.483
qcrA
Menaquinol:cytochrome c oxidoreductase (iron-sulfur subunit).
      
 0.465
ykyB
Hypothetical protein.
       0.433
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.