STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ymcAConserved hypothetical protein; Belongs to the UPF0342 family. (143 aa)    
Predicted Functional Partners:
ylbF
YlbF; Belongs to the UPF0342 family.
  
 
 
 0.997
yaaT
Putative signal peptidase II YaaT; Involved in the transduction of signals to the phosphorelay for initiation of sporulation, similar to signal peptidase II, contains PSP1_C terminal domain.
  
   
 0.887
ymcB
Conserved hypothetical protein; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
  
  
 0.852
yheA
Conserved hypothetical protein YheA; Belongs to the UPF0342 family.
  
 
 
 0.797
ylaN
YlaN; Belongs to the UPF0358 family.
  
     0.748
yqzF
Conserved protein YqzF.
  
     0.744
yuiB
Conserved membrane protein YuiB.
  
     0.742
ywhD
YwhD.
  
    0.740
yqgY
Conserved protein YqgY.
  
     0.738
ygzB
Hypothetical protein.
  
     0.734
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.