STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ykaAPutative gamma glutamyl tranferase YkaA. (205 aa)    
Predicted Functional Partners:
pit
Low-affinity inorganic phosphate transporter.
 
  
 0.987
BL01980
Sulfate permease.
 
  
 0.918
cysP
Sulfate permease.
 
  
 0.880
spoIISA
Stage II sporulation protein SA SpoIISA.
       0.539
spoIISB
Stage II sporulation protein SB SpoIISB.
       0.539
ygaO
Conserved hypothetical protein.
      
 0.510
yybA
Negative regulator of yyaTS - YybA.
   
  
 0.505
ynbA
GTP-binding protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.
      
 0.491
yknU
ABC transporter.
      
 0.446
yjcJ
Putative Cystathionine beta-lyase.
      
 0.446
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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