STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ykfDOligopeptide/dipeptide ABC transporter YkfD; Belongs to the ABC transporter superfamily. (337 aa)    
Predicted Functional Partners:
ykfC
Putative hydrolase.
  
  
 0.982
dppC
Dipeptide ABC transporter (permease).
 
 0.979
ykfB
Putative muconate cycloisomerase.
  
  
 0.963
ykfA
Conserved hypothetical protein.
  
  
 0.962
dppB
Dipeptide ABC transporter (permease).
 
 
 0.956
appC
Oligopeptide ABC transporter (permease).
 
 0.953
BL03048
Oligopeptide ABC transporter (permease).
 
 0.945
oppC
Oligopeptide ABC transporter (permease).
 
 0.944
dppE
Dipeptide ABC transporter (dipeptide-binding protein).
 
  
 0.926
appCA
Oligopeptide ABC transporter (permease).
 
 0.906
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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