STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ykfDOligopeptide/dipeptide ABC transporter YkfD; Belongs to the ABC transporter superfamily. (337 aa)    
Predicted Functional Partners:
dppC
Dipeptide ABC transporter (permease).
 
  0.972
ykfC
Putative hydrolase.
  
  
 0.963
appC
Oligopeptide ABC transporter (permease).
 
  0.961
dppB
Dipeptide ABC transporter (permease).
 
  0.947
ykfB
Putative muconate cycloisomerase.
  
  
 0.946
oppC
Oligopeptide ABC transporter (permease).
 
  0.942
BL03048
Oligopeptide ABC transporter (permease).
 
  0.940
dppE
Dipeptide ABC transporter (dipeptide-binding protein).
 
 
 0.926
appCB
Oligopeptide ABC transporter (permease).
 
  0.906
appB
Oligopeptide ABC transporter (permease).
 
 0.901
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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