STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ykfCPutative hydrolase. (295 aa)    
Predicted Functional Partners:
ykfB
Putative muconate cycloisomerase.
 
  
 0.992
ykfD
Oligopeptide/dipeptide ABC transporter YkfD; Belongs to the ABC transporter superfamily.
  
  
 0.982
ykfA
Conserved hypothetical protein.
 
  
 0.963
dppE
Dipeptide ABC transporter (dipeptide-binding protein).
 
    0.884
dppB
Dipeptide ABC transporter (permease).
 
    0.826
dppA
D-alanyl-aminopeptidase.
 
    0.789
dppD
Dipeptide ABC transporter (ATP-binding protein); Belongs to the ABC transporter superfamily.
  
    0.766
cwlO
Putative peptidoglycan hydrolase, DL-endopeptidase II family; Shows a cell wall hydrolytic DL-endopeptidase activity. Belongs to the peptidase C40 family.
 
  
 0.731
dppC
Dipeptide ABC transporter (permease).
 
    0.718
appDB
Dipeptide ABC transporter (ATP-binding protein).
   
    0.593
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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